| No |
Deliverable title |
Month
|
Nature |
Level |
| 1 - D1.1 |
Optimised
synchronisation protocol for yeasts, Arabidopsis, human cells |
12 |
R |
PU |
|
VIB-PSB / Martin
Kuiper |
06.02.06 |
|
|
| 2 - D1.2 |
Transcript
data providing a detailed description of transcriptome evolution through
cell cycle |
24 |
R |
PP,
PU |
|
|
BRIC
/ Kristian Helin / Daniela Kleine-Kohlbrecher |
01.05.07
|
|
|
| 3 - D1.3 |
Macro
arrays for core cell cycle genes in A. thaliana |
24 |
P |
PU |
|
|
VIB-PSB / Gerrit Beemster
- Martin Kuiper |
|
|
|
| 4 - D1.4 |
Protein complex data showcasing the dynamics of key complexes through cell cycle
|
24 |
R |
PP !
|
|
|
VIB-PSB / Geert De Jaeger
- Martin Kuiper |
16.04.07
|
|
|
| 5 - D1.5 |
Y2H interaction data on a core set of cell cycle proteins |
30 |
R |
PP,
PU |
| |
|
|
|
|
| 6 - D1.6 |
Novel components
of cell cycle regulation, including alternative splice forms |
36 |
R |
PU |
| |
|
|
|
|
| 7 - D1.7 |
Assorted reagents
for functional studies of selected genes/proteins |
36 |
P |
PU |
| |
|
|
|
|
| 8
- D2.1 |
Survey
Report on state of the art classification methods |
6 |
R |
PU |
|
HUJI / Michal Linial |
28.06.05 |
|
|
| 9 - D2.2 |
Set
of Guidelines for data validation and assessing of confidence of prediction |
6 |
R |
PU |
|
HUJI / Michal Linial |
29.06.05 |
|
|
| 10 - D2.3 |
Preliminary
ontology for cell cycle gene families |
18 |
R |
PU |
|
VIB-PSB / Martin
Kuiper |
09.08.06 |
|
|
| 11 - D2.4 |
Method
for cell cycle protein identification beyond primary sequence similarity |
18 |
R |
PP,
PU |
|
CBS / Søren
Brunak |
16.08.06 |
|
|
| 12 - D2.5 |
Structural annotation
for cell cycle regulators gene families |
36 |
R |
PU |
| |
|
|
|
|
| 13 - D2.6 |
Partial functional
annotation for cell cycle regulators gene families |
36 |
R |
PU |
| |
|
|
|
|
| 14 - D3.1 |
Methods
for data integration and functional classification and prediction |
12 |
R |
PP,
PU |
|
HUJI / Michal Linial |
28.02.06 |
|
|
| 15 - D3.2 |
Algorithms
for transcription profile correlation and graph-based clustering |
12 |
R |
PP,
PU |
|
|
EBI / ALvis Brazma
- CBS / Søren Brunak |
10.03.06 |
|
|
| 16 - D3.3 |
Algorithms
for the analysis of periodicity in correlated gene expression data sets |
18 |
P |
PP,
PU |
|
CBS / Søren
Brunak |
16.08.06 |
|
|
| 17 - D3.4 |
Methods
for the extraction and analysis of functional modules, pathways |
18 |
R |
PP,
PU |
|
UMed / Denis Thieffry |
21.08.06 |
|
|
| 18 - D3.5 |
Sets
of network modules and of cis-regulatory motifs |
24 |
R |
PP,
PU |
|
|
CBS / Søren
Brunak |
22.05.07
|
|
|
| 19 - D3.6 |
Detailed description
of genetic sub-networks constituting major control devices |
36 |
R |
PU |
| |
|
|
|
|
| 20 - D4.1 |
Graph
edition and visualization software for qualitative model building |
24 |
P |
PP,
PU |
|
|
UMed / Denis Thieffry |
28.02.07
|
|
|
| 21 - D4.2 |
Selection of crucial
candidate cell-cycle genes and feedback on experimental setup |
24 |
R |
PP,
PU |
| |
|
|
|
|
| 22 - D4.3 |
An interactive modular
and graphical representation of the main cell cycle regulators in different
organisms |
36 |
P |
PU |
| |
|
|
|
|
| 23 - D5.1 |
DIAMONDS web site
available |
3 |
P |
PU |
 |
Yes, indeed,
obviously accomplished as you are reading this... |
March
'05 |
|
|
| 24 - D5.2 |
Definition
of the essential design characteristics of the toolbox |
6 |
R |
PU |
 |
NorayBio / Alicia
Barrilero |
05.07.05 |
|
|
| 25
- D5.3 |
GUI
Beta version |
24 |
R
|
RE,
PP
|
| |
NorayBio / Alicia Barrilero |
25.04.07
|
|
|
| 26 - D5.4 |
Bioinformatics platform, final product |
36 |
P |
PU |
| |
|
|
|
|
