| No | Deliverable title | Month
|
Nature |
Level |
| 1 - D1.1 | Optimised synchronisation protocol for yeasts, Arabidopsis, human cells | 12 |
R |
PU |
 |
VIB-PSB / Martin Kuiper | 06.02.06 |
||
| 2 - D1.2 | Transcript data providing a detailed description of transcriptome evolution through cell cycle | 24 |
R |
PP,
PU |
 |
BRIC / Kristian Helin / Daniela Kleine-Kohlbrecher |
01.05.07
|
||
| 3 - D1.3 | Macro arrays for core cell cycle genes in A. thaliana | 24 |
P |
PU |
|
|
VIB-PSB / Gerrit Beemster - Martin Kuiper | |||
| 4 - D1.4 | Protein complex data showcasing the dynamics of key complexes through cell cycle | 24 |
R |
PP
!
|
|
|
VIB-PSB / Geert De Jaeger - Martin Kuiper |
16.04.07
|
||
| 5 - D1.5 | Y2H interaction data on a core set of cell cycle proteins | 30 |
R |
PP,
PU |
| 6 - D1.6 | Novel components of cell cycle regulation, including alternative splice forms | 36 |
R |
PU |
| 7 - D1.7 | Assorted reagents for functional studies of selected genes/proteins | 36 |
P |
PU |
| 8 - D2.1 | Survey Report on state of the art classification methods | 6 |
R |
PU |
 |
HUJI / Michal Linial | 28.06.05 |
||
| 9 - D2.2 | Set of Guidelines for data validation and assessing of confidence of prediction | 6 |
R |
PU |
|
HUJI / Michal Linial | 29.06.05 |
||
| 10 - D2.3 | Preliminary ontology for cell cycle gene families | 18 |
R |
PU |
|
VIB-PSB / Martin Kuiper | 09.08.06 |
||
| 11 - D2.4 | Method for cell cycle protein identification beyond primary sequence similarity | 18 |
R |
PP,
PU |
 |
CBS / Søren Brunak | 16.08.06 |
||
| 12 - D2.5 | Structural annotation for cell cycle regulators gene families | 36 |
R |
PU |
| 13 - D2.6 | Partial functional annotation for cell cycle regulators gene families | 36 |
R |
PU |
| 14 - D3.1 | Methods for data integration and functional classification and prediction | 12 |
R |
PP,
PU |
|
HUJI / Michal Linial | 28.02.06 |
||
| 15 - D3.2 | Algorithms for transcription profile correlation and graph-based clustering | 12 |
R |
PP,
PU |
 |
EBI / ALvis Brazma - CBS / Søren Brunak | 10.03.06 |
||
| 16 - D3.3 | Algorithms for the analysis of periodicity in correlated gene expression data sets | 18 |
P |
PP,
PU |
|
CBS / Søren Brunak | 16.08.06 |
||
| 17 - D3.4 | Methods for the extraction and analysis of functional modules, pathways | 18 |
R |
PP,
PU |
 |
UMed / Denis Thieffry | 21.08.06 |
||
| 18 - D3.5 | Sets of network modules and of cis-regulatory motifs | 24 |
R |
PP,
PU |
|
|
CBS / Søren Brunak |
22.05.07
|
||
| 19 - D3.6 | Detailed description of genetic sub-networks constituting major control devices | 36 |
R |
PU |
| 20 - D4.1 | Graph edition and visualization software for qualitative model building | 24 |
P |
PP,
PU |
|
|
UMed / Denis Thieffry |
28.02.07
|
||
| 21 - D4.2 | Selection of crucial candidate cell-cycle genes and feedback on experimental setup | 24 |
R |
PP,
PU |
| 22 - D4.3 | An interactive modular and graphical representation of the main cell cycle regulators in different organisms | 36 |
P |
PU |
| 23 - D5.1 | DIAMONDS web site available | 3 |
P |
PU |
|
Yes, indeed, obviously accomplished as you are reading this... | March
'05 |
||
| 24 - D5.2 | Definition of the essential design characteristics of the toolbox | 6 |
R |
PU |
 |
NorayBio / Alicia Barrilero | 05.07.05 |
||
| 25 - D5.3 | GUI Beta version |
24 |
R
|
RE,
PP
|
| NorayBio / Alicia Barrilero |
25.04.07
|
|||
| 26 - D5.4 | Bioinformatics platform, final product | 36 |
P |
PU |