Nature: R = Report; P = Prototype. Level: PU = Public; PP = Restricted to other programme participants; RE = Restricted to a group specified by the consortium.

No Deliverable title
Month
Nature
Level
1 - D1.1 Optimised synchronisation protocol for yeasts, Arabidopsis, human cells
12
R
PU
 
VIB-PSB / Martin Kuiper
06.02.06
2 - D1.2 Transcript data providing a detailed description of transcriptome evolution through cell cycle
24
R
PP, PU
 
BRIC / Kristian Helin / Daniela Kleine-Kohlbrecher
01.05.07
3 - D1.3 Macro arrays for core cell cycle genes in A. thaliana
24
P
PU
 
VIB-PSB / Gerrit Beemster - Martin Kuiper
4 - D1.4 Protein complex data showcasing the dynamics of key complexes through cell cycle
24
R
PP !
 
VIB-PSB / Geert De Jaeger - Martin Kuiper
16.04.07
5 - D1.5 Y2H interaction data on a core set of cell cycle proteins
30
R
PP, PU
   
6 - D1.6 Novel components of cell cycle regulation, including alternative splice forms
36
R
PU
   
7 - D1.7 Assorted reagents for functional studies of selected genes/proteins
36
P
PU
   
8 - D2.1 Survey Report on state of the art classification methods
6
R
PU
HUJI / Michal Linial
28.06.05
9 - D2.2 Set of Guidelines for data validation and assessing of confidence of prediction
6
R
PU
 
HUJI / Michal Linial
29.06.05
10 - D2.3 Preliminary ontology for cell cycle gene families
18
R
PU
 
VIB-PSB / Martin Kuiper
09.08.06
11 - D2.4 Method for cell cycle protein identification beyond primary sequence similarity
18
R
PP, PU
 
CBS / Søren Brunak
16.08.06
12 - D2.5 Structural annotation for cell cycle regulators gene families
36
R
PU
   
13 - D2.6 Partial functional annotation for cell cycle regulators gene families
36
R
PU
   
14 - D3.1 Methods for data integration and functional classification and prediction
12
R
PP, PU
 
HUJI / Michal Linial
28.02.06
15 - D3.2 Algorithms for transcription profile correlation and graph-based clustering
12
R
PP, PU
 
EBI / ALvis Brazma - CBS / Søren Brunak
10.03.06
16 - D3.3 Algorithms for the analysis of periodicity in correlated gene expression data sets
18
P
PP, PU
 
CBS / Søren Brunak
16.08.06
17 - D3.4 Methods for the extraction and analysis of functional modules, pathways
18
R
PP, PU
 
UMed / Denis Thieffry
21.08.06
18 - D3.5 Sets of network modules and of cis-regulatory motifs
24
R
PP, PU
 
CBS / Søren Brunak
22.05.07
19 - D3.6 Detailed description of genetic sub-networks constituting major control devices
36
R
PU
   
20 - D4.1 Graph edition and visualization software for qualitative model building
24
P
PP, PU
 
UMed / Denis Thieffry
28.02.07
21 - D4.2 Selection of crucial candidate cell-cycle genes and feedback on experimental setup
24
R
PP, PU
   
22 - D4.3 An interactive modular and graphical representation of the main cell cycle regulators in different organisms
36
P
PU
   
23 - D5.1 DIAMONDS web site available
3
P
PU
Yes, indeed, obviously accomplished as you are reading this...
March '05
24 - D5.2 Definition of the essential design characteristics of the toolbox
6
R
PU
NorayBio / Alicia Barrilero
05.07.05
25 - D5.3 GUI Beta version
24
R
RE, PP
  NorayBio / Alicia Barrilero
25.04.07
26 - D5.4 Bioinformatics platform, final product
36
P
PU